2021

Remodeling of the maternal gut microbiome during pregnancy is shaped by parity. Berry ASF, Pierdon MK, Misic AM, Sullivan MC, O'Brien K, Chen Y, Murray SJ, Ramharack LA, Baldassano RN, Parsons TD, Beiting DP. Microbiome. 2021 Jun 27;9(1):146. Doi: 10.1186/s40168-021-01089-8. PMID: 34176489

Breastfeeding influences the neonatal virome. Bushman FD, Liang G. Nature. 2021 May 14. doi: 10.1038/d41586-021-01112-w. PMID: 34002074

The lung microbiome in lung transplantation. McGinniss JE, Whiteside SA, Simon-Soro A, Diamond JM, Christie JD, Bushman FD, Collman RG. J Heart Lung Transplant. 2021 May 7:S1053-2498(21)02300-7. doi: 10.1016/j.healun.2021.04.014. PMID: 34120840

Rengasvirus, a Circular Replication-Associated Protein-Encoding Single-Stranded DNA Virus-Related Genome That Is a Common Contaminant in Metagenomic Data. Keeler EL, Taylor LJ, Abbas A, Collman RG, Bushman FD. Microbiol Resour Announc. 2021 May 6;10(18):e00273-21. doi: 10.1128/MRA.00273-21. PMID: 33958399

An integrated self-powered 3D printed sample concentrator for highly sensitive molecular detection of HIV in whole blood at the point of care. Kadimisetty K , Yin K , Roche AM , Yi Y , Bushman FD , Collman RG , Gross R , Feng L , Liu C. Analyst. 2021 May 21;146(10):3234-3241. doi: 10.1039/d0an02482a. Epub 2021 Apr 8. PMID: 33999045\

The human virome: assembly, composition and host interactions. Liang G, Bushman FD. Nat Rev Microbiol. 2021 Mar 30:1-14. doi: 10.1038/s41579-021-00536-5. Online ahead of print. PMID: 33785903

Maternal gut microbiota reflecting poor diet quality is associated with spontaneous preterm birth in a prospective cohort study. Gershuni V, Li Y, Elovitz M, Li H, Wu GD, Compher CW. Am J Clin Nutr. 2021 Mar 11;113(3):602-611. doi: 10.1093/ajcn/nqaa361.PMID: 33515003

ICTV Virus Taxonomy Profile: Redondoviridae. Abbas A, Taylor LJ, Collman RG, Bushman FD, Ictv Report Consortium. J Gen Virol. 2021 Jan;102(1):001526. doi: 10.1099/jgv.0.001526. Epub 2020 Nov 27. PMID: 33258767

Mitochondrial dysfunction in inflammatory bowel disease alters intestinal epithelial metabolism of hepatic acylcarnitines. Smith SA, Ogawa SA, Chau L, Whelan KA, Hamilton KE, Chen J, Tan L, Chen EZ, Keilbaugh S, Fogt F, Bewtra M, Braun J, Xavier RJ, Clish CB, Slaff B, Weljie AM, Bushman FD, Lewis JD, Li H, Master SR, Bennett MJ, Nakagawa H, Wu GD. J Clin Invest. 2021 Jan 4;131(1):e133371. doi: 10.1172/JCI133371. PMID: 33141762

Fecal Microbiota Transplantation Is Highly Effective in Real-World Practice: Initial Results From the FMT National Registry. Kelly CR, Yen EF, Grinspan AM, Kahn SA, Atreja A, Lewis JD, Moore TA, Rubin DT, Kim AM, Serra S, Nersesova Y, Fredell L, Hunsicker D, McDonald D, Knight R, Allegretti JR, Pekow J, Absah I, Hsu R, Vincent J, Khanna S, Tangen L, Crawford CV, Mattar MC, Chen LA, Fischer M, Arsenescu RI, Feuerstadt P, Goldstein J, Kerman D, Ehrlich AC, Wu GD, Laine L. Gastroenterology. 2021 Jan;160(1):183-192.e3. Doi: 10.1053/j.gastro.2020.09.038. Epub 2020 Oct 1. PMID: 33011173

Vajravelu ME, Lee JJ, Mitteer L, Kelly A, Zemel B, Bittinger K, De León DD. Gut microbiome profile after pancreatectomy in infants with congenital hyperinsulinism. Pancreas, Jan 1, 2021, 50(1): 89-92. DOI: 10.1097/MPA.0000000000001708. PMID: 33370028 PMCID: PMC7783597.

Tanes C, Bittinger K, Gao Y, Friedman ES, Nessel L, Paladhi UR, Chau L, Panfen E, Fischbach MA, Braun J, Xavier RJ, Clish CB, Li H, Bushman FD, Lewis JD, Wu GD. Role of dietary fiber in the recovery of the human gut microbiome and its metabolome. Cell Host Microbe, Jan 8, 2021, S1931-3128(20)30674-0. DOI: 10.1016/j.chom.2020.12.012. PMID: 33440171.

Roy Paladhi U, Harb AH, Daniel S, Dawwas GK, Schnellinger EM, Wollack C, Aberra FN, Bewtra M, Green JA…Bittinger K, Lewis JD. The impact of introducing patient-reported Inflammatory Bowel Disease Symptoms via electronic survey on clinic visit length, patient and provider satisfaction, and the environment microbiome. Inflamm Bowel Dis, Jan 16, 2021. DOI: 10.1093/ibd/izaa356. PMID: 33452800.
85. Simon-Soro A, Dongyeop K, Yong L, Liu Y, Tatsura I, Sims Jr KR, Benoit DSW, Bittinger K, Koo Hyun. Impact of the repurposed drug thonzonium bromide on host oral-gut microbiomes. NPJ Biofilms Microbiomes, Jan 22, 2021; 7(1):7. DOI: 10.1038/s41522-020-00181-5. PMID: 33483519 PMCID: PMC7822857.

Littmann ER, Lee JJ, Denny JE, Alam Z, Maslanka JR, Zarin I, Matsuda R, Carter RA, Susac B, Saffern MS, Fett B, Mattei LM, Bittinger K, Abt MC. Host immunity modulates the efficacy of microbiota transplantation for treatment of Clostridioides difficile infection. Nat Commun., Feb 2, 2021, 12(1):755. DOI: 10.1038/s41467-020-20793-x. PMID: 33531483 PMCID: PMC7854624.

Rhee RL, Lu J, Bittinger K, Lee JJ, Mattei LM, Sreih AG, Chou S, Miner JJ, Cohen NA, Kelly BJ, Lee H, Grayson PC, Collman RG, Merkel PA. Dynamic changes in the nasal microbiome associated with disease activity in patients with granulomatosis with polyangiitis. Arthritis Rheumatol., Mar 7, 2021. DOI: 10.1002/art.41723. PMID: 33682371. (Epub ahead of print).

Firrman J, Liu L, Mahalak K, Tanes C, Bittinger K, Bobokalonov J, Mattei L, Zhang H, Van den Abbeele P. Comparative analysis of the gut microbiota cultured in vitro using a single colon versus a 3-stage colon experimental design. Appl Microbiol Biotechnol, Apr 2021; 105(8). DOI: 10.1007/s00253-021-11241-x. PMID: 33765200.

Weiss SL, Bittinger K, Lee JJ, Friedman ES, Mattei LM, Graham K, Zhang D, Bush J, Balamuth F, McGowan FX Jr, Bushman FD, Baldassano RN, Wu GD, Wallace DC, Collman RG. Decreased intestinal microbiome diversity in pediatric sepsis: A conceptual framework for intestinal dysbiosis to influence immunometabolic function. Crit Care Explor, Mar 17,2021;3(3):e0360. DOI: 10.1097/CCE.0000000000000360. PMID: 33786436. PMCID: PMC7994045.

Merenstein C, Liang G, Whiteside SA, Cobián-Güemes AG, Merlino MS, Taylor LJ, Glascock A, Bittinger K, Tanes C, Graham-Wooten J, Khatib LA, Fitzgerald AS, Reddy S, Baxter AE, Giles JR, Oldridge DA, Meyer NJ, Wherry EJ, McGinniss JE, Bushman FD, Collman RG. Signatures of COVID-19 severity and immune response in the respiratory tract microbiome. medRxiv, Apr 5, 2021. DOI: 10.1101/2021.04.02.21254514. PMID: 33851179 PMCID: PMC8043476. (Note: Preprint).

Byeon J, Blizinsky KD, Persaud A, Findley K, Lee JJ, Buscetta AJ, You S, Bittinger K, Minniti CP, Bonham VL, Grice EA. Insights into the skin microbiome of sickle cell disease leg ulcers. Wound Repair Regen, May 8, 2021. DOI: 10.1111/wrr.12924. PMID: 33964094. (Note: Epub ahead of print).

Payne E, Harrington K, Richard P, Brackin R, Davis R, Couture S,...Bittinger K,... Stevenson GW. Effects of vancomycin on persistent pain-stimulated and pain-depressed behaviors in female Fischer rats with or without voluntary access to running wheels. J Pain, May 21, 2021. DOI: 10.1016/j.jpain.2021.05.003. PMID: 34029686. (Note: Epub ahead of print).

Lewis JD, Sandler R, Brotherton C, Brensinger C, Li H, Kappelman MD, Daniel SG, Bittinger K, Albenberg L, Valentine JF, Hanson J, Suskind D, Meyer A, Compher CW, Bewtra M, Saxena A, Dobes A, Cohen B, Flynn AD, Fischer M, Saha S, Swaminath A, Yacyshyn B, Scherl E, Horst S, Curtis JR, Braly K, Nessel L, McCauley M, McKeever L, Herfarth H; DINE-CD Study Group. A randomized trial comparing the specific carbohydrate diet to a Mediterranean diet in adults with Crohn’s Disease. Gastroenterology, May 27, 2021. DOI: 10.1053/j.gastro.2021.05.047. PMID: 34052278.

Tang SY, Meng H, Anderson ST, Sarantopoulou D, Ghosh S, Lahens NF, Theken KN, Ricciotti E, Hennessy EJ, Tu V, Bittinger K, Weljie AM, Grant GR, FitzGerald GA. Sex-dependent compensatory mechanisms preserve blood pressure homeostasis in prostacyclin receptor deficient mice. J Clin Invest, Jun 8, 2021. DOI: 10.1172/JCI136310. PMID: 34101620.