2020

Long-Term Outcomes Following Multiply Recurrent Clostridioides difficile Infection and Fecal Microbiota Transplantation. Dawwas G, Brensinger CM, Vajravelu RK, Wu Q, Kelly CR, Laine L, Wu GD, Lewis JD. Clin Gastroenterol Hepatol. 2020 Dec 8:S1542-3565(20)31642-6. Doi: 10.1016/j.cgh.2020.12.004. Online ahead of print. PMID: 33307184

Monitoring Fecal Microbiota Transplantation Practice in a Rapidly Evolving Health and Regulatory Environment. Kelly CR, Laine LA, Wu GD. Gastroenterology. 2020 Dec;159(6):2004-2006. doi: 10.1053/j.gastro.2020.08.039. Epub 2020 Aug 22. PMID: 32841646

Natural Infection with Giardia Is Associated with Altered Community Structure of the Human and Canine Gut Microbiome. Berry ASF, Johnson K, Martins R, Sullivan MC, Farias Amorim C, Putre A, Scott A, Wang S, Lindsay B, Baldassano RN, Nolan TJ, Beiting DP. mSphere. 2020 Aug 5;5(4):e00670-20. doi: 10.1128/mSphere.00670-20. PMID: 32759335

The Structure and Function of the Human Small Intestinal Microbiota: Current Understanding and Future Directions. Kastl AJ Jr, Terry NA, Wu GD, Albenberg LG. Cell Mol Gastroenterol Hepatol. 2020;9(1):33-45. doi: 10.1016/j.jcmgh.2019.07.006. Epub 2019 Jul 22. PMID: 31344510

Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians. Rubel MA, Abbas A, Taylor LJ, Connell A, Tanes C, Bittinger K, Ndze VN, Fonsah JY, Ngwang E, Essiane A, Fokunang C, Njamnshi AK, Bushman FD, Tishkoff SA. Genome Biol. 2020 May 25;21(1):122. doi: 10.1186/s13059-020-02020-4. PMID: 32450885

Impact of steviol glycosides and erythritol on the human and Cebus apella gut microbiome. Mahalak KK, Firrman J, Tomasula PM, Nuñez A, Lee JJ, Bittinger K, Rinaldi W, Liu LS. J Agric Food Chem, Jan 7, 2020. DOI: 10.1021/acs.jafc.9b06181. PMID: 31869223. (Epub ahead of print).

Sialylation and fucosylation modulate inflammasome-activating eIF2 signaling and microbial translocation during HIV infection. Giron L, Tanes C, Høsbjerg Schleimann M, Engen PM, Mattei L, Anzurez A, Damra M, Zhang H, Bittinger K, Bushman FD, Kossenkov A, Denton PW, Tateno H, Keshavarzian A, Landay AL, Pandrea IV, Qin, L. Mucosal Immunology. https://doi.org/10.1038/s41385-020-0279-5. (Epub ahead of print).

Bacterial colonization reprograms the neonatal gut metabolome.
Bittinger K, Zhao C, Li Y, Ford E, Friedman ES, Ni J, Kulkarni C, Cai J, Tian Y, Liu Q, Patterson AD, Sarkar D, Chan SHJ, Maranas C, Saha-Shah A, Lund P, Garcia BA, Mattei LM, Gerber JS, Elovitz MA, Kelly A, DeRusso P, Kim D, Hofstaedter CE, Goulian M , Li H, Bushman FD, Zemel B, Wu GD., Nature Microbiology. (Note: accepted February 18, 2020).

Sialylation and fucosylation modulate inflammasome-activating eIF2 signaling and microbial translocation during HIV infection.
Giron L, Tanes C, Høsbjerg Schleimann M, Engen PM, Mattei L, Anzurez A, Damra M, Zhang H, Bittinger K, Bushman FD, Kossenkov A, Denton PW, Tateno H, Keshavarzian A, Landay AL, Pandrea IV, Qin, L., Mucosal Immunology. (Note: accepted February 21, 2020).

Bacterial colonization reprograms the neonatal gut metabolome.
Bittinger K, Zhao C, Li Y, Ford E, Friedman ES, Ni J, Kulkarni C, Cai J, Tian Y, Liu Q, Patterson AD, Sarkar D, Chan SHJ, Maranas C, Saha-Shah A, Lund P, Garcia BA, Mattei LM, Gerber JS, Elovitz MA, Kelly A, DeRusso P, Kim D, Hofstaedter CE, Goulian M , Li H, Bushman FD, Zemel B, Wu GD. Nature Microbiology, Apr 13, 2020. https://doi.org/10.1038/s41564-020-0694-0. (Epub ahead of print).

Permissive microbiome characterizes human subjects with a neurovascular disease cavernous angioma.
Polster S, Sharma A, Tanes C, Tang A, Mericko P, Cao Y, Carrión-Penagos J, Girard R, Koskimäki J, Zhang D, Stadnik A, Romanos S, Lyne S, Shenkar R, Yan K, Lee C, Akers A, Morrison L, Robinson M, Zafar A, Bittinger K, Kim H, Gilbert J, Kahn M, Shen L, Awad I. Nature Communications, May 27, 2020, 11(2659). DOI:

Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro.
Mahalak KK, Firrman J, Lee JJ, Bittinger K, Nuñez A, Mattei LM, Zhang H, Fett B, Bobokalonov J, Arango-Argoty G, Zhang L, Zhang G, Liu LS. PLOS ONE, Jun 25, 2020, 15(6). DOI: 10.1371/journal.pone.0234046. PMID: 32585680. PMCID: PMC7316517.

Multi-omic analysis of the interaction between Clostridioides difficile infection and pediatric inflammatory bowel disease.
Bushman FD, Conrad M, Ren Y, Zhao C, Gu C, Petucci C, Kim MS, Abbas A, Downes KJ, Devas N, Mattei L, Breton J, Kelsen J, Marakos S, Galgano A, Kachelries K, Erlichman J, Hart JL, Moraskie M, Kim D, Zhang H, Hofstaedter CE, Wu GD, Lewis JD, Zackular JP, Li H, Bittinger K, Baldassano RN. Cell Host and Microbe, Aug 20, 2020. DOI: https://doi.org/10.1016/j.chom.2020.07.020. PMID: 32822584.

Microbiome changes in young periodontitis patients treated with adjunctive metronidazole and amoxicillin.
Feres M, Retamal-Valdes B, Fermaino D, Faveri, M, Figueiredo LC, Mayer MPA, Lee JJ, Bittinger K, Teles F. Journal of Periodontology, Aug 25, 2020.DOI: 10.1002/JPER.20-0128. PMID: 32844406. (Epub ahead of print).

Effect of topical swallowed steroids on the bacterial and fungal esophageal microbiota in eosinophilic esophagitis.
Benitez A, Tanes C, Mattei LM, Hofstaedter CE, Kim DK, Gross J, Ruffner MA, Albenberg L, Spergel J, Bittinger K, Muir AB. Allergy, 20 Sep 2020. DOI:10.1111/all14602. PMID: 32990947. (Note: EPub ahead of print).

Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly.
Gu C, Bushman FD, Zhao C, Hofstaedter C, Tebas P, Glaser L, Baldassano RN, Bittinger K, Mattei LM. PLOS ONE. (Note, accepted Oct 21, 2020).

Gut microbiome profile after pancreatectomy in infants with congenital hyperinsulinism.
Vajraelu ME, Lee JJ, Mitteer L, Kelly A, Zemel B, Bittinger K, De León DD. Pancreas. (Note, accepted Oct 28, 2020).

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